Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 AL591846.1-201ENST00000451736 433 ntBASIC13.83□□□□□ -0.2
LIM2P55344 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.83□□□□□ -0.2
LIM2P55344 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 AC005730.2-201ENST00000564549 1184 ntBASIC13.83□□□□□ -0.2
LIM2P55344 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.83□□□□□ -0.2
LIM2P55344 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.83□□□□□ -0.2
LIM2P55344 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.83□□□□□ -0.2
LIM2P55344 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
LIM2P55344 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
LIM2P55344 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
LIM2P55344 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
LIM2P55344 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LIM2P55344 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
LIM2P55344 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.82□□□□□ -0.2
LIM2P55344 AL359881.3-201ENST00000602640 1721 ntBASIC13.82□□□□□ -0.2
LIM2P55344 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.82□□□□□ -0.2
LIM2P55344 REXO1L6P-201ENST00000603433 1515 ntBASIC13.82□□□□□ -0.2
LIM2P55344 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
LIM2P55344 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
LIM2P55344 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 BRWD1P1-201ENST00000401091 371 ntBASIC13.82□□□□□ -0.2
LIM2P55344 MIR1908-201ENST00000410394 80 ntBASIC13.82□□□□□ -0.2
LIM2P55344 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 HNRNPA1P63-201ENST00000427917 963 ntBASIC13.82□□□□□ -0.2
LIM2P55344 AC012441.2-201ENST00000444843 739 ntBASIC13.82□□□□□ -0.2
LIM2P55344 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.82□□□□□ -0.2
LIM2P55344 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.82□□□□□ -0.2
LIM2P55344 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.82□□□□□ -0.2
LIM2P55344 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.82□□□□□ -0.2
LIM2P55344 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 AC104982.3-201ENST00000581995 514 ntBASIC13.82□□□□□ -0.2
LIM2P55344 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 AC091271.1-201ENST00000611877 1162 ntBASIC13.82□□□□□ -0.2
LIM2P55344 AC005695.3-201ENST00000614522 232 ntBASIC13.82□□□□□ -0.2
LIM2P55344 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.82□□□□□ -0.2
LIM2P55344 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.82□□□□□ -0.2
LIM2P55344 Z98259.2-201ENST00000641583 609 ntBASIC13.82□□□□□ -0.2
LIM2P55344 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
LIM2P55344 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
LIM2P55344 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms