Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CDH3P22223 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CDH3P22223 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 AC004945.1-201ENST00000416738 983 ntBASIC14.4□□□□□ -0.1
CDH3P22223 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 HIST2H2BB-201ENST00000449108 381 ntBASIC14.4□□□□□ -0.1
CDH3P22223 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 RPSAP36-202ENST00000494591 1261 ntBASIC14.4□□□□□ -0.1
CDH3P22223 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 FAM8A2P-201ENST00000528813 1142 ntBASIC14.4□□□□□ -0.1
CDH3P22223 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.4□□□□□ -0.1
CDH3P22223 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.4□□□□□ -0.1
CDH3P22223 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 AC243960.2-201ENST00000600996 747 ntBASIC14.4□□□□□ -0.1
CDH3P22223 PRKN-211ENST00000615065 261 ntTSL 5 BASIC14.4□□□□□ -0.1
CDH3P22223 AC023090.2-201ENST00000625182 2110 ntBASIC14.4□□□□□ -0.1
CDH3P22223 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.4□□□□□ -0.1
CDH3P22223 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CDH3P22223 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 AC011840.2-201ENST00000563063 1520 ntBASIC14.4□□□□□ -0.1
CDH3P22223 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CDH3P22223 SLC6A6P1-201ENST00000413933 1850 ntBASIC14.4□□□□□ -0.1
CDH3P22223 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CDH3P22223 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH3P22223 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH3P22223 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CDH3P22223 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH3P22223 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH3P22223 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 RN7SKP175-201ENST00000408472 289 ntBASIC14.39□□□□□ -0.11
CDH3P22223 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH3P22223 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH3P22223 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.39□□□□□ -0.11
CDH3P22223 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CDH3P22223 AC138696.2-201ENST00000607376 223 ntBASIC14.39□□□□□ -0.11
CDH3P22223 AL118558.3-201ENST00000607414 1079 ntBASIC14.39□□□□□ -0.11
CDH3P22223 AC002472.3-201ENST00000640124 621 ntBASIC14.39□□□□□ -0.11
CDH3P22223 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 AC020910.5-201ENST00000623668 1865 ntBASIC14.39□□□□□ -0.11
CDH3P22223 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH3P22223 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.39□□□□□ -0.11
CDH3P22223 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CDH3P22223 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CDH3P22223 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.39□□□□□ -0.11
CDH3P22223 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms