Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
PCNAP12004 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.3□□□□□ -0.12
PCNAP12004 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
PCNAP12004 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
PCNAP12004 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.29□□□□□ -0.12
PCNAP12004 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PCNAP12004 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.29□□□□□ -0.12
PCNAP12004 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 AC092933.1-201ENST00000393644 945 ntBASIC14.29□□□□□ -0.12
PCNAP12004 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.29□□□□□ -0.12
PCNAP12004 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.29□□□□□ -0.12
PCNAP12004 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.29□□□□□ -0.12
PCNAP12004 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.29□□□□□ -0.12
PCNAP12004 BTNL10-201ENST00000595971 695 ntBASIC14.29□□□□□ -0.12
PCNAP12004 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PCNAP12004 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
PCNAP12004 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
PCNAP12004 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
PCNAP12004 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
PCNAP12004 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 COX5BP8-201ENST00000416911 349 ntBASIC14.28□□□□□ -0.12
PCNAP12004 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 FAM197Y7-201ENST00000432892 766 ntBASIC14.28□□□□□ -0.12
PCNAP12004 AC016694.1-201ENST00000434179 700 ntBASIC14.28□□□□□ -0.12
PCNAP12004 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
PCNAP12004 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.28□□□□□ -0.12
PCNAP12004 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.28□□□□□ -0.12
PCNAP12004 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
PCNAP12004 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.28□□□□□ -0.12
PCNAP12004 AC244669.2-201ENST00000612320 853 ntBASIC14.28□□□□□ -0.12
PCNAP12004 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 AC132938.4-201ENST00000623835 848 ntBASIC14.28□□□□□ -0.12
PCNAP12004 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.28□□□□□ -0.12
PCNAP12004 AC092053.3-201ENST00000641308 4975 ntBASIC14.28□□□□□ -0.12
PCNAP12004 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.28□□□□□ -0.12
PCNAP12004 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms