Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CHMP1AQ9HD42 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 MECOM-206ENST00000464456 5732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 MAP3K9-205ENST00000554752 11169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 WNK1-209ENST00000537687 11232 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AC092580.3-201ENST00000430932 139 ntBASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 FAM86LP-201ENST00000478302 853 ntBASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AC135586.1-201ENST00000539323 574 ntBASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 CALM1-205ENST00000553542 877 ntTSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AL049840.4-201ENST00000602422 811 ntBASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AC093028.1-201ENST00000622998 982 ntBASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AL590560.3-201ENST00000623350 461 ntBASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 ATP2C2-AS1-201ENST00000565700 2998 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CHMP1AQ9HD42 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 AL138799.1-201ENST00000448213 1675 ntBASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 CLK3P2-201ENST00000427566 1453 ntBASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 BTBD7P1-201ENST00000447253 1453 ntBASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 RNF165-202ENST00000543885 4852 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 AL645937.2-201ENST00000396808 931 ntBASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 RPL13AP25-201ENST00000484130 612 ntBASIC12.67□□□□□ -0.38
CHMP1AQ9HD42 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms