Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.66■□□□□ 0.26
USP28Q96RU2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 AL512384.1-201ENST00000406683 331 ntBASIC16.66■□□□□ 0.26
USP28Q96RU2 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 AC007551.1-201ENST00000457394 519 ntBASIC16.66■□□□□ 0.26
USP28Q96RU2 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.66■□□□□ 0.26
USP28Q96RU2 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.66■□□□□ 0.26
USP28Q96RU2 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC16.66■□□□□ 0.26
USP28Q96RU2 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.66■□□□□ 0.26
USP28Q96RU2 C2orf69P2-201ENST00000562032 1123 ntBASIC16.66■□□□□ 0.26
USP28Q96RU2 AL596325.1-201ENST00000563991 1082 ntBASIC16.66■□□□□ 0.26
USP28Q96RU2 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
USP28Q96RU2 KRT8P4-201ENST00000509735 1454 ntBASIC16.66■□□□□ 0.26
USP28Q96RU2 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.66■□□□□ 0.26
USP28Q96RU2 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP28Q96RU2 AL365209.1-201ENST00000624418 6473 ntBASIC16.65■□□□□ 0.26
USP28Q96RU2 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 MIR600HG-201ENST00000449175 5984 ntBASIC16.65■□□□□ 0.26
USP28Q96RU2 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 AC006001.1-201ENST00000325130 474 ntBASIC16.65■□□□□ 0.26
USP28Q96RU2 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.65■□□□□ 0.26
USP28Q96RU2 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
USP28Q96RU2 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 AC010141.1-201ENST00000411585 623 ntBASIC16.65■□□□□ 0.26
USP28Q96RU2 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.65■□□□□ 0.26
USP28Q96RU2 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.65■□□□□ 0.26
USP28Q96RU2 CHMP1AP1-201ENST00000445563 662 ntBASIC16.65■□□□□ 0.26
USP28Q96RU2 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.65■□□□□ 0.26
USP28Q96RU2 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.65■□□□□ 0.26
USP28Q96RU2 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.65■□□□□ 0.26
USP28Q96RU2 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.65■□□□□ 0.26
USP28Q96RU2 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
USP28Q96RU2 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
USP28Q96RU2 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
USP28Q96RU2 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
USP28Q96RU2 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.65■□□□□ 0.26
USP28Q96RU2 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP28Q96RU2 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
USP28Q96RU2 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.64■□□□□ 0.26
USP28Q96RU2 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
USP28Q96RU2 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
USP28Q96RU2 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
USP28Q96RU2 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms