Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 CHMP1AP1-201ENST00000445563 662 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AC100850.1-201ENST00000506768 649 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 MIR4683-201ENST00000579659 81 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AC002472.3-201ENST00000640124 621 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 POM121L4P-202ENST00000427789 1891 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AP000593.2-201ENST00000542775 1433 ntBASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLIP3Q96DZ5 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 AC023157.3-201ENST00000619086 2088 ntBASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 AC126915.1-201ENST00000522847 1038 ntBASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 NKG7-204ENST00000595217 816 ntTSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 KLK11-210ENST00000600362 759 ntTSL 3 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 AL136301.1-201ENST00000615830 422 ntBASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CLIP3Q96DZ5 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.21□□□□□ -0.14
CLIP3Q96DZ5 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.2□□□□□ -0.14
CLIP3Q96DZ5 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms