Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SCN8A-208ENST00000599343 5976 ntAPPRIS ALT1 TSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 MARCH8-204ENST00000453424 5638 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 NUTM2B-202ENST00000372321 3970 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 IL1R2-201ENST00000332549 1578 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PLEKHG5-203ENST00000377728 3613 ntAPPRIS P3 TSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 GAB2-201ENST00000340149 6052 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ARMC9-215ENST00000614261 4975 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SDR16C5-203ENST00000522671 1988 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 AC006033.2-201ENST00000609522 1968 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PCDHGB2-201ENST00000522605 4602 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ANKDD1A-201ENST00000319580 3110 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CACNB3-204ENST00000547230 2395 ntTSL 3 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DRAM1-201ENST00000258534 3519 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DLGAP2-AS1-201ENST00000518009 1810 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PCDHA10-202ENST00000506939 3788 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ANKRD20A7P-201ENST00000402318 2414 ntBASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PAM-204ENST00000348126 3622 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 FER1L5-206ENST00000624922 6367 ntAPPRIS P2 TSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SARS-202ENST00000369923 1882 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CHRNA1-208ENST00000636168 1862 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 TMF1-201ENST00000398559 6849 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SPRTN-202ENST00000295050 3468 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KLHL23-202ENST00000392647 4077 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 HLCS-202ENST00000399120 6466 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KLHL30-201ENST00000409223 3726 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PLK4-209ENST00000513090 3123 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 MCM3-202ENST00000419835 2523 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PI4KAP1-204ENST00000612579 1703 ntBASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SEC14L2-214ENST00000615189 4382 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SPACA6P-AS-201ENST00000602324 3962 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ARHGEF10-205ENST00000518288 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SRRT-216ENST00000618262 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 INO80-211ENST00000616814 4272 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 FGF23-201ENST00000237837 3018 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 YWHAB-201ENST00000353703 3049 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 AL357054.4-201ENST00000606285 2814 ntBASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KLF11-206ENST00000540845 3885 ntAPPRIS ALT2 TSL 2 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 SLC20A2-201ENST00000342228 3657 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 HECW2-202ENST00000409111 6692 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 KIF28P-202ENST00000504864 3064 ntBASIC8.99□□□□□ -0.97
LINC00643Q86TS7 NBR1-205ENST00000589872 3097 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
LINC00643Q86TS7 ZNF827-201ENST00000379448 4197 ntAPPRIS P3 TSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 UGGT2-203ENST00000376747 4832 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 SMG7-214ENST00000508461 3985 ntAPPRIS ALT2 TSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 TIAM1-206ENST00000541036 7018 ntTSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 EPB41L5-201ENST00000263713 6628 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 MED15-201ENST00000263205 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 SLC4A5-204ENST00000377634 3814 ntAPPRIS P4 TSL 5 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC8.98□□□□□ -0.97
LINC00643Q86TS7 INAVA-201ENST00000367342 4298 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms