Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 KRT18P37-201ENST00000520711 1282 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 ANKRD26P1-203ENST00000569528 966 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 RN7SL556P-201ENST00000582856 298 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 MYADML-201ENST00000474610 2147 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 OR52M2P-201ENST00000414298 959 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 MTHFR-210ENST00000641407 2387 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 AC027612.2-202ENST00000445955 1199 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 RN7SL147P-201ENST00000487345 298 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 RN7SL767P-201ENST00000493013 295 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 AC142086.5-202ENST00000562500 217 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC88AQ3V6T2 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 OR10N1P-201ENST00000392758 869 ntBASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 AC104961.1-201ENST00000427605 771 ntBASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 HINT1-205ENST00000508488 703 ntTSL 2 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC88AQ3V6T2 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 AC023824.1-201ENST00000562945 2975 ntBASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC88AQ3V6T2 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms