Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA4P78363 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA4P78363 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 FRMPD2B-201ENST00000431305 1347 ntBASIC12.55□□□□□ -0.4
ABCA4P78363 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
ABCA4P78363 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 BANF1P3-201ENST00000412556 261 ntBASIC12.55□□□□□ -0.4
ABCA4P78363 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 AL035414.1-201ENST00000451327 857 ntBASIC12.55□□□□□ -0.4
ABCA4P78363 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
ABCA4P78363 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC12.55□□□□□ -0.4
ABCA4P78363 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
ABCA4P78363 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 AHCYP4-201ENST00000419201 1315 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
ABCA4P78363 RPSAP15-201ENST00000448168 861 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC12.54□□□□□ -0.4
ABCA4P78363 AL132780.4-201ENST00000624870 1135 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 HIST2H2BA-201ENST00000412169 381 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC092638.2-201ENST00000441105 947 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC006122.1-201ENST00000493323 440 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 AC090857.1-201ENST00000527400 390 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 AP000911.2-201ENST00000534330 502 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 AL022334.2-201ENST00000610000 484 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 LINC01783-202ENST00000614408 828 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 BX284668.2-205ENST00000619677 828 ntBASIC12.54□□□□□ -0.4
ABCA4P78363 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.54□□□□□ -0.4
ABCA4P78363 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
ABCA4P78363 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
ABCA4P78363 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms