Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
FOXA1P55317 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
FOXA1P55317 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 AC092933.1-201ENST00000393644 945 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 FAM197Y7-201ENST00000432892 766 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 CICP12-201ENST00000455801 843 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 RNA5SP486-201ENST00000515961 83 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
FOXA1P55317 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 AL365181.3-201ENST00000605886 3222 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.12□□□□□ -0.15
FOXA1P55317 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
FOXA1P55317 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
FOXA1P55317 AP006294.1-201ENST00000415407 339 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.11□□□□□ -0.15
FOXA1P55317 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 FAM8A4P-201ENST00000435433 1213 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 AL355864.2-201ENST00000447420 863 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 BCRP2-202ENST00000447763 634 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.11□□□□□ -0.15
FOXA1P55317 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.11□□□□□ -0.15
FOXA1P55317 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.11□□□□□ -0.15
FOXA1P55317 BCRP6-201ENST00000510112 632 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 BCRP7-201ENST00000511549 544 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.11□□□□□ -0.15
FOXA1P55317 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.11□□□□□ -0.15
FOXA1P55317 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.11□□□□□ -0.15
FOXA1P55317 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.11□□□□□ -0.15
FOXA1P55317 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.11□□□□□ -0.15
FOXA1P55317 AC104506.1-201ENST00000609247 429 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
FOXA1P55317 AC099521.3-201ENST00000624251 2938 ntBASIC14.11□□□□□ -0.15
FOXA1P55317 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms