Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
MSH6P52701 FAU-201ENST00000279259 461 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH6P52701 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
MSH6P52701 LCK-206ENST00000373564 2137 ntTSL 5 BASIC19.75■□□□□ 0.75
MSH6P52701 AC073210.1-201ENST00000414799 232 ntBASIC19.75■□□□□ 0.75
MSH6P52701 FAM197Y6-201ENST00000420524 766 ntBASIC19.75■□□□□ 0.75
MSH6P52701 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH6P52701 AC093300.1-201ENST00000510368 1201 ntBASIC19.75■□□□□ 0.75
MSH6P52701 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC19.75■□□□□ 0.75
MSH6P52701 ANKRD26P1-203ENST00000569528 966 ntBASIC19.75■□□□□ 0.75
MSH6P52701 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC19.75■□□□□ 0.75
MSH6P52701 AL591424.3-201ENST00000614278 872 ntBASIC19.75■□□□□ 0.75
MSH6P52701 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
MSH6P52701 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC19.75■□□□□ 0.75
MSH6P52701 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
MSH6P52701 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 AC007952.5-201ENST00000572818 1486 ntBASIC19.74■□□□□ 0.75
MSH6P52701 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
MSH6P52701 HLF-202ENST00000430986 1385 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH6P52701 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 OLA1P2-201ENST00000395519 1264 ntBASIC19.74■□□□□ 0.75
MSH6P52701 ABCD1P4-201ENST00000399687 604 ntBASIC19.74■□□□□ 0.75
MSH6P52701 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC19.74■□□□□ 0.75
MSH6P52701 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC19.74■□□□□ 0.75
MSH6P52701 STK24P1-201ENST00000455035 1291 ntBASIC19.74■□□□□ 0.75
MSH6P52701 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.74■□□□□ 0.75
MSH6P52701 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC19.74■□□□□ 0.75
MSH6P52701 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC19.74■□□□□ 0.75
MSH6P52701 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC19.74■□□□□ 0.75
MSH6P52701 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
MSH6P52701 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH6P52701 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MSH6P52701 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MSH6P52701 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH6P52701 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 AC046158.3-201ENST00000624947 2558 ntBASIC19.73■□□□□ 0.75
MSH6P52701 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC19.73■□□□□ 0.75
MSH6P52701 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
MSH6P52701 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
MSH6P52701 RPL3P2-204ENST00000413027 1203 ntBASIC19.73■□□□□ 0.75
MSH6P52701 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC19.73■□□□□ 0.75
MSH6P52701 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC19.73■□□□□ 0.75
MSH6P52701 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC19.73■□□□□ 0.75
MSH6P52701 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC19.73■□□□□ 0.75
MSH6P52701 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH6P52701 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH6P52701 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms