Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL160191.2-201ENST00000603975 601 ntBASIC14.31□□□□□ -0.12
CXCL12P48061 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC14.31□□□□□ -0.12
CXCL12P48061 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 AC026471.1-201ENST00000564629 3026 ntBASIC14.31□□□□□ -0.12
CXCL12P48061 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.31□□□□□ -0.12
CXCL12P48061 ACE3P-201ENST00000423435 1973 ntBASIC14.31□□□□□ -0.12
CXCL12P48061 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CXCL12P48061 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CXCL12P48061 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.3□□□□□ -0.12
CXCL12P48061 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 ASS1P2-201ENST00000439895 1223 ntBASIC14.3□□□□□ -0.12
CXCL12P48061 RN7SL788P-201ENST00000460504 316 ntBASIC14.3□□□□□ -0.12
CXCL12P48061 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
CXCL12P48061 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC14.3□□□□□ -0.12
CXCL12P48061 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.3□□□□□ -0.12
CXCL12P48061 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.3□□□□□ -0.12
CXCL12P48061 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.3□□□□□ -0.12
CXCL12P48061 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CXCL12P48061 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CXCL12P48061 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CXCL12P48061 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CXCL12P48061 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC14.29□□□□□ -0.12
CXCL12P48061 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC14.29□□□□□ -0.12
CXCL12P48061 AL451000.1-201ENST00000451300 1186 ntBASIC14.29□□□□□ -0.12
CXCL12P48061 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.29□□□□□ -0.12
CXCL12P48061 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.29□□□□□ -0.12
CXCL12P48061 RBM4-207ENST00000506523 654 ntTSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms