Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG1P18858 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LIG1P18858 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG1P18858 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
LIG1P18858 COL6A4P2-202ENST00000504443 2753 ntBASIC16.85■□□□□ 0.29
LIG1P18858 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 RN7SKP230-201ENST00000365642 335 ntBASIC16.85■□□□□ 0.29
LIG1P18858 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 MIR658-201ENST00000385210 100 ntBASIC16.85■□□□□ 0.29
LIG1P18858 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 TLE1P1-201ENST00000422965 589 ntBASIC16.85■□□□□ 0.29
LIG1P18858 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.85■□□□□ 0.29
LIG1P18858 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.85■□□□□ 0.29
LIG1P18858 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.85■□□□□ 0.29
LIG1P18858 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.85■□□□□ 0.29
LIG1P18858 AC017083.2-201ENST00000608069 979 ntBASIC16.85■□□□□ 0.29
LIG1P18858 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
LIG1P18858 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 KRT8P35-201ENST00000483942 1338 ntBASIC16.85■□□□□ 0.29
LIG1P18858 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LIG1P18858 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
LIG1P18858 AL157996.1-201ENST00000624684 2299 ntBASIC16.85■□□□□ 0.29
LIG1P18858 AC015818.8-201ENST00000587907 1519 ntBASIC16.85■□□□□ 0.29
LIG1P18858 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG1P18858 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
LIG1P18858 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LIG1P18858 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.84■□□□□ 0.29
LIG1P18858 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 AC114812.1-204ENST00000449669 728 ntBASIC16.84■□□□□ 0.29
LIG1P18858 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LIG1P18858 FTH1P14-201ENST00000482930 551 ntBASIC16.84■□□□□ 0.29
LIG1P18858 AC022137.2-201ENST00000503482 481 ntBASIC16.84■□□□□ 0.29
LIG1P18858 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.84■□□□□ 0.29
LIG1P18858 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.84■□□□□ 0.29
LIG1P18858 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIG1P18858 AP005019.2-201ENST00000615104 511 ntBASIC16.84■□□□□ 0.29
LIG1P18858 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LIG1P18858 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG1P18858 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 LRRC59-203ENST00000576448 1531 ntBASIC16.84■□□□□ 0.29
LIG1P18858 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG1P18858 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 186.3 ms