Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 CYP46A4P-201ENST00000414953 267 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD4P09016 HINT2P1-201ENST00000419438 481 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 AL133466.1-201ENST00000447582 150 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 AL035414.1-201ENST00000451327 857 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 TSACC-208ENST00000481479 741 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD4P09016 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXD4P09016 AC013355.1-201ENST00000562625 723 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.32□□□□□ -0.28
HOXD4P09016 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXD4P09016 AP000346.4-201ENST00000614827 381 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 AC091812.3-201ENST00000621362 345 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD4P09016 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 AC126365.1-201ENST00000578585 1514 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD4P09016 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HOXD4P09016 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD4P09016 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.31□□□□□ -0.28
HOXD4P09016 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC13.31□□□□□ -0.28
HOXD4P09016 AC245884.6-201ENST00000515672 1067 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 AC005730.2-201ENST00000564549 1184 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.31□□□□□ -0.28
HOXD4P09016 MIR4683-201ENST00000579659 81 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 AC009955.4-201ENST00000597192 544 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.31□□□□□ -0.28
HOXD4P09016 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.31□□□□□ -0.28
HOXD4P09016 AC009884.2-201ENST00000603110 324 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.31□□□□□ -0.28
HOXD4P09016 BX088702.1-201ENST00000610784 235 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
HOXD4P09016 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 AJ011931.1-201ENST00000618749 2492 ntBASIC13.31□□□□□ -0.28
HOXD4P09016 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
HOXD4P09016 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
HOXD4P09016 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HOXD4P09016 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.3□□□□□ -0.28
HOXD4P09016 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms