Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.3□□□□□ -0.12
SIX3O95343 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SIX3O95343 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 LINC02486-201ENST00000604157 3000 ntBASIC14.29□□□□□ -0.12
SIX3O95343 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SIX3O95343 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 FAM90A12P-201ENST00000519497 2375 ntBASIC14.29□□□□□ -0.12
SIX3O95343 FAM90A24P-201ENST00000520792 2369 ntBASIC14.29□□□□□ -0.12
SIX3O95343 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SIX3O95343 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 AC098614.1-201ENST00000368528 745 ntBASIC14.29□□□□□ -0.12
SIX3O95343 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 FAM8A4P-201ENST00000435433 1213 ntBASIC14.29□□□□□ -0.12
SIX3O95343 AC007389.4-201ENST00000454674 793 ntBASIC14.29□□□□□ -0.12
SIX3O95343 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.29□□□□□ -0.12
SIX3O95343 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.29□□□□□ -0.12
SIX3O95343 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
SIX3O95343 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
SIX3O95343 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.29□□□□□ -0.12
SIX3O95343 AC244669.2-201ENST00000612320 853 ntBASIC14.29□□□□□ -0.12
SIX3O95343 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
SIX3O95343 AC025048.6-201ENST00000634326 1161 ntBASIC14.29□□□□□ -0.12
SIX3O95343 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 AC002472.3-201ENST00000640124 621 ntBASIC14.29□□□□□ -0.12
SIX3O95343 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.29□□□□□ -0.12
SIX3O95343 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.29□□□□□ -0.12
SIX3O95343 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
SIX3O95343 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SIX3O95343 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.28□□□□□ -0.12
SIX3O95343 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SIX3O95343 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.28□□□□□ -0.12
SIX3O95343 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
SIX3O95343 CICP17-201ENST00000418553 2377 ntBASIC14.28□□□□□ -0.12
SIX3O95343 ARSEP1-201ENST00000420443 635 ntBASIC14.28□□□□□ -0.12
SIX3O95343 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
SIX3O95343 FTH1P14-201ENST00000482930 551 ntBASIC14.28□□□□□ -0.12
SIX3O95343 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.28□□□□□ -0.12
SIX3O95343 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.28□□□□□ -0.12
SIX3O95343 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.28□□□□□ -0.12
SIX3O95343 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.28□□□□□ -0.12
SIX3O95343 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.28□□□□□ -0.12
SIX3O95343 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.28□□□□□ -0.12
SIX3O95343 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.28□□□□□ -0.12
SIX3O95343 AC008735.3-201ENST00000596646 500 ntBASIC14.28□□□□□ -0.12
SIX3O95343 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.28□□□□□ -0.12
SIX3O95343 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SIX3O95343 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms