Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AC022080.1-201ENST00000366255 781 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 LINC00265-2P-201ENST00000413372 782 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AL080243.1-201ENST00000423293 1060 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 AC092896.1-201ENST00000465850 380 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.44■□□□□ 0.38
CCDC88AQ3V6T2 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 AC064801.2-201ENST00000625052 1303 ntBASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 FAU-201ENST00000279259 461 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 BCL2L12P1-201ENST00000508390 733 ntBASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC88AQ3V6T2 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 RN7SL788P-201ENST00000460504 316 ntBASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 KNOP1P1-201ENST00000542108 989 ntBASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AL021707.6-201ENST00000609212 491 ntBASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 MIR6074-201ENST00000612054 107 ntBASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AC110057.1-201ENST00000636031 898 ntBASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC88AQ3V6T2 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 RHOC-205ENST00000369636 786 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 KRT18P4-201ENST00000422599 1288 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 AP000244.1-201ENST00000424582 201 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 AC005740.1-201ENST00000515639 522 ntBASIC17.41■□□□□ 0.38
CCDC88AQ3V6T2 AC090136.2-201ENST00000517809 420 ntBASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms