Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 AC007431.3-201ENST00000623221 587 ntBASIC11.3□□□□□ -0.6
HIST1H1AQ02539 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC11.3□□□□□ -0.6
HIST1H1AQ02539 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 OR2I1P-208ENST00000641137 4948 ntBASIC11.29□□□□□ -0.6
HIST1H1AQ02539 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 GOLGA8VP-201ENST00000559009 1798 ntBASIC11.29□□□□□ -0.6
HIST1H1AQ02539 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MPV17-208ENST00000405076 603 ntTSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TMPRSS11CP-201ENST00000453277 683 ntBASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AL662799.1-202ENST00000614205 422 ntBASIC11.29□□□□□ -0.6
HIST1H1AQ02539 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC083964.2-201ENST00000623988 2396 ntBASIC11.29□□□□□ -0.6
HIST1H1AQ02539 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
HIST1H1AQ02539 AC023090.2-201ENST00000625182 2110 ntBASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms