Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MST1P2-201ENST00000457982 2291 ntBASIC13.87□□□□□ -0.19
LIM2P55344 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
LIM2P55344 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.87□□□□□ -0.19
LIM2P55344 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
LIM2P55344 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.86□□□□□ -0.19
LIM2P55344 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.86□□□□□ -0.19
LIM2P55344 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.86□□□□□ -0.19
LIM2P55344 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 SORD2P-201ENST00000558556 1069 ntBASIC13.86□□□□□ -0.19
LIM2P55344 AC100827.2-201ENST00000563214 1194 ntBASIC13.86□□□□□ -0.19
LIM2P55344 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.86□□□□□ -0.19
LIM2P55344 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.86□□□□□ -0.19
LIM2P55344 MIR6720-201ENST00000611664 98 ntBASIC13.86□□□□□ -0.19
LIM2P55344 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 AL096828.3-201ENST00000615354 462 ntBASIC13.86□□□□□ -0.19
LIM2P55344 AL162426.1-201ENST00000624141 743 ntBASIC13.86□□□□□ -0.19
LIM2P55344 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.86□□□□□ -0.19
LIM2P55344 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.86□□□□□ -0.19
LIM2P55344 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
LIM2P55344 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
LIM2P55344 RN7SL832P-201ENST00000607781 1756 ntBASIC13.86□□□□□ -0.19
LIM2P55344 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
LIM2P55344 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 AC012617.1-204ENST00000586340 2305 ntBASIC13.85□□□□□ -0.19
LIM2P55344 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
LIM2P55344 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 MIR663B-201ENST00000408361 115 ntBASIC13.85□□□□□ -0.19
LIM2P55344 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
LIM2P55344 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.85□□□□□ -0.19
LIM2P55344 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.85□□□□□ -0.19
LIM2P55344 AC027237.1-201ENST00000560942 655 ntBASIC13.85□□□□□ -0.19
LIM2P55344 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC13.85□□□□□ -0.19
LIM2P55344 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.85□□□□□ -0.19
LIM2P55344 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms