Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA1P55317 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
FOXA1P55317 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 AC015909.5-201ENST00000624336 2266 ntBASIC14.15□□□□□ -0.14
FOXA1P55317 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
FOXA1P55317 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 AL161932.2-201ENST00000435436 679 ntBASIC14.14□□□□□ -0.15
FOXA1P55317 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.14□□□□□ -0.15
FOXA1P55317 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.14□□□□□ -0.15
FOXA1P55317 AC027237.1-201ENST00000560942 655 ntBASIC14.14□□□□□ -0.15
FOXA1P55317 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.14□□□□□ -0.15
FOXA1P55317 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.14□□□□□ -0.15
FOXA1P55317 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 AC132938.4-201ENST00000623835 848 ntBASIC14.14□□□□□ -0.15
FOXA1P55317 AC002472.3-201ENST00000640124 621 ntBASIC14.14□□□□□ -0.15
FOXA1P55317 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
FOXA1P55317 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
FOXA1P55317 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA1P55317 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA1P55317 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
FOXA1P55317 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
FOXA1P55317 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.13□□□□□ -0.15
FOXA1P55317 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
FOXA1P55317 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.13□□□□□ -0.15
FOXA1P55317 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 CRB3P1-201ENST00000449338 276 ntBASIC14.13□□□□□ -0.15
FOXA1P55317 RN7SL837P-201ENST00000463010 287 ntBASIC14.13□□□□□ -0.15
FOXA1P55317 TERF1P3-201ENST00000505638 1227 ntBASIC14.13□□□□□ -0.15
FOXA1P55317 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.13□□□□□ -0.15
FOXA1P55317 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.13□□□□□ -0.15
FOXA1P55317 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
FOXA1P55317 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.13□□□□□ -0.15
FOXA1P55317 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA1P55317 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.12□□□□□ -0.15
FOXA1P55317 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.12□□□□□ -0.15
FOXA1P55317 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
FOXA1P55317 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms