Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CIITAP33076 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CIITAP33076 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CIITAP33076 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CIITAP33076 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
CIITAP33076 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CIITAP33076 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.34■□□□□ 0.21
CIITAP33076 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CIITAP33076 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.34■□□□□ 0.21
CIITAP33076 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.34■□□□□ 0.21
CIITAP33076 MEG3_2.1-201ENST00000611456 105 ntBASIC16.34■□□□□ 0.21
CIITAP33076 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.34■□□□□ 0.21
CIITAP33076 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CIITAP33076 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CIITAP33076 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
CIITAP33076 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
CIITAP33076 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.34■□□□□ 0.21
CIITAP33076 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CIITAP33076 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CIITAP33076 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CIITAP33076 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CIITAP33076 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.33■□□□□ 0.2
CIITAP33076 AC006335.1-201ENST00000445200 547 ntBASIC16.33■□□□□ 0.2
CIITAP33076 RN7SL11P-201ENST00000471305 293 ntBASIC16.33■□□□□ 0.2
CIITAP33076 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CIITAP33076 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CIITAP33076 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 AP001505.2-201ENST00000616815 443 ntBASIC16.33■□□□□ 0.2
CIITAP33076 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.33■□□□□ 0.2
CIITAP33076 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CIITAP33076 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 HSPA8P5-201ENST00000456928 2069 ntBASIC16.33■□□□□ 0.2
CIITAP33076 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CIITAP33076 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CIITAP33076 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms