Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 AP000769.1-203ENST00000637245 208 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 TMBIM7P-202ENST00000641474 1516 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.9□□□□□ -0.02
COL9A1P20849 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
COL9A1P20849 AHCYP4-201ENST00000419201 1315 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 CYP4F23P-201ENST00000593402 1579 ntBASIC14.9□□□□□ -0.02
COL9A1P20849 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.9□□□□□ -0.02
COL9A1P20849 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL9A1P20849 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 TMBIM7P-203ENST00000641617 1718 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
COL9A1P20849 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 KRT8P6-201ENST00000399259 1207 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 AL954722.1-201ENST00000431238 259 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC14.89□□□□□ -0.03
COL9A1P20849 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 B9D1-206ENST00000461069 923 ntTSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 AC011431.1-201ENST00000512971 230 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC14.89□□□□□ -0.03
COL9A1P20849 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC14.89□□□□□ -0.03
COL9A1P20849 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
COL9A1P20849 AC017076.1-201ENST00000607613 578 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC14.89□□□□□ -0.03
COL9A1P20849 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 ZBED1P1-201ENST00000502364 1930 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
COL9A1P20849 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 MARK2P16-201ENST00000605714 1723 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL9A1P20849 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL9A1P20849 AC025183.3-201ENST00000623526 1482 ntBASIC14.89□□□□□ -0.03
COL9A1P20849 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.88□□□□□ -0.03
COL9A1P20849 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.88□□□□□ -0.03
COL9A1P20849 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.88□□□□□ -0.03
COL9A1P20849 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.88□□□□□ -0.03
COL9A1P20849 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 AC144522.1-201ENST00000625111 1658 ntBASIC14.88□□□□□ -0.03
COL9A1P20849 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.88□□□□□ -0.03
COL9A1P20849 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL9A1P20849 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL9A1P20849 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.88□□□□□ -0.03
COL9A1P20849 MIR611-201ENST00000384869 67 ntBASIC14.88□□□□□ -0.03
COL9A1P20849 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
COL9A1P20849 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC14.88□□□□□ -0.03
COL9A1P20849 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC14.88□□□□□ -0.03
COL9A1P20849 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms