Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 AC005324.6-201ENST00000587972 613 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXD4P09016 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.34□□□□□ -0.27
HOXD4P09016 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 AC004923.1-202ENST00000642106 209 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 AC126755.1-201ENST00000525846 6405 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 TUBBP5-203ENST00000508529 1334 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXD4P09016 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 CICP11-201ENST00000434745 2827 ntBASIC13.34□□□□□ -0.27
HOXD4P09016 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXD4P09016 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXD4P09016 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.34□□□□□ -0.27
HOXD4P09016 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HOXD4P09016 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
HOXD4P09016 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
HOXD4P09016 CES1P1-201ENST00000421606 1704 ntBASIC13.33□□□□□ -0.27
HOXD4P09016 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXD4P09016 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXD4P09016 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
HOXD4P09016 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD4P09016 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 AL157414.3-201ENST00000624276 1954 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.33□□□□□ -0.28
HOXD4P09016 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXD4P09016 AC016700.1-201ENST00000429424 312 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 NKAIN1P1-201ENST00000435754 582 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 AC012441.2-201ENST00000444843 739 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD4P09016 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 AC044849.1-201ENST00000519737 1188 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD4P09016 CHMP4BP1-201ENST00000556017 588 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXD4P09016 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD4P09016 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 AC022748.3-201ENST00000621828 275 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 CU633904.3-201ENST00000624042 1029 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 AL162426.1-201ENST00000624141 743 ntBASIC13.33□□□□□ -0.28
HOXD4P09016 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.33□□□□□ -0.28
HOXD4P09016 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HOXD4P09016 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HOXD4P09016 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXD4P09016 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXD4P09016 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXD4P09016 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HOXD4P09016 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD4P09016 LILRP1-201ENST00000444199 1370 ntBASIC13.32□□□□□ -0.28
HOXD4P09016 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD4P09016 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HOXD4P09016 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.32□□□□□ -0.28
HOXD4P09016 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXD4P09016 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXD4P09016 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXD4P09016 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms