Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 PFN2-206ENST00000461930 606 ntTSL 4 BASIC11.79□□□□□ -0.52
HOXA3O43365 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC11.79□□□□□ -0.52
HOXA3O43365 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA3O43365 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 RBM8B-201ENST00000555532 525 ntBASIC11.79□□□□□ -0.52
HOXA3O43365 AC242376.1-201ENST00000559033 726 ntBASIC11.79□□□□□ -0.52
HOXA3O43365 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 PAM16-211ENST00000575848 518 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
HOXA3O43365 NAT9-211ENST00000580632 799 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC11.79□□□□□ -0.52
HOXA3O43365 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC11.79□□□□□ -0.52
HOXA3O43365 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA3O43365 SNX1-214ENST00000625244 324 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA3O43365 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC11.79□□□□□ -0.52
HOXA3O43365 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HOXA3O43365 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC11.79□□□□□ -0.52
HOXA3O43365 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HOXA3O43365 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA3O43365 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
HOXA3O43365 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 RAN-210ENST00000541630 1475 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 UFM1-202ENST00000379649 846 ntTSL 4 BASIC11.78□□□□□ -0.52
HOXA3O43365 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HOXA3O43365 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 AL645933.1-201ENST00000440087 609 ntBASIC11.78□□□□□ -0.52
HOXA3O43365 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA3O43365 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA3O43365 CEP164P1-201ENST00000455142 418 ntBASIC11.78□□□□□ -0.52
HOXA3O43365 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA3O43365 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA3O43365 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC006122.1-201ENST00000493323 440 ntBASIC11.78□□□□□ -0.52
HOXA3O43365 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA3O43365 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA3O43365 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC11.78□□□□□ -0.52
HOXA3O43365 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA3O43365 SPCS2P2-201ENST00000603270 608 ntBASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms