Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 RN7SL277P-201ENST00000481521 288 ntBASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 AC025183.3-201ENST00000623526 1482 ntBASIC27.36■■□□□ 1.97
SHROOM4Q9ULL8 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 CELP-201ENST00000411440 1249 ntTSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHROOM4Q9ULL8 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 NME6-208ENST00000435684 599 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 ST13P19-201ENST00000442505 1124 ntBASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 PPIA-208ENST00000489459 907 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 SRP14-204ENST00000558720 780 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 AL139339.2-201ENST00000608063 657 ntBASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 PPIA-210ENST00000620047 827 ntTSL 5 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 CICP14-201ENST00000629111 2732 ntBASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC27.34■■□□□ 1.97
SHROOM4Q9ULL8 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 GNG10P1-201ENST00000452289 199 ntBASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 ABHD17AP9-201ENST00000561925 548 ntBASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 RN7SL665P-201ENST00000578793 300 ntBASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 RN7SL357P-201ENST00000581065 298 ntBASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 AP005212.2-201ENST00000584979 510 ntBASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 MARS-233ENST00000628866 2583 ntTSL 5 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHROOM4Q9ULL8 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 USB1-205ENST00000561743 1135 ntTSL 3 BASIC27.32■■□□□ 1.96
SHROOM4Q9ULL8 AP005264.6-204ENST00000588436 719 ntBASIC27.32■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms