Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC60Q8IWA6 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AC126755.1-201ENST00000525846 6405 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 FOS-206ENST00000555347 1280 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PHBP15-201ENST00000574228 665 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 MIR6074-201ENST00000612054 107 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 TBC1D3J-201ENST00000620719 1426 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AC007718.1-201ENST00000621078 280 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AC090386.2-201ENST00000623010 1039 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 AL390755.1-201ENST00000623716 2027 ntBASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC60Q8IWA6 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC60Q8IWA6 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC60Q8IWA6 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.14■□□□□ 0.18
CCDC60Q8IWA6 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 EEF1DP6-201ENST00000449232 372 ntBASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 RN7SL258P-201ENST00000478664 300 ntBASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 AC021016.3-201ENST00000608367 477 ntBASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 LAP3P2-201ENST00000454686 1454 ntBASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 AC064801.2-201ENST00000625052 1303 ntBASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC60Q8IWA6 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms