Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AL354877.1-201ENST00000424412 413 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 FAM58BP-201ENST00000439056 645 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 CICP12-201ENST00000455801 843 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 FAM8A2P-201ENST00000528813 1142 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC103988.2-201ENST00000561804 725 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AC091271.1-201ENST00000611877 1162 ntBASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NUP54Q7Z3B4 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 REXO1L6P-201ENST00000603433 1515 ntBASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 HSPB1P2-201ENST00000448722 546 ntBASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 AL591846.1-201ENST00000451736 433 ntBASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
NUP54Q7Z3B4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AC139712.1-201ENST00000378256 1875 ntBASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NUP54Q7Z3B4 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms