Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.17□□□□□ -0.14
FOXA1P55317 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
FOXA1P55317 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA1P55317 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA1P55317 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
FOXA1P55317 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 AC064801.2-201ENST00000625052 1303 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 AC067750.1-201ENST00000608826 6545 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
FOXA1P55317 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
FOXA1P55317 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
FOXA1P55317 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA1P55317 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 TPM3P8-201ENST00000330554 643 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
FOXA1P55317 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 ARSEP1-201ENST00000420443 635 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 AC011495.1-201ENST00000498085 584 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
FOXA1P55317 OR10B1P-201ENST00000601666 907 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.16□□□□□ -0.14
FOXA1P55317 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.16□□□□□ -0.14
FOXA1P55317 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.16□□□□□ -0.14
FOXA1P55317 PPT1-213ENST00000641319 2388 ntBASIC14.16□□□□□ -0.14
FOXA1P55317 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
FOXA1P55317 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA1P55317 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.15□□□□□ -0.14
FOXA1P55317 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA1P55317 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
FOXA1P55317 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 AC004945.1-201ENST00000416738 983 ntBASIC14.15□□□□□ -0.14
FOXA1P55317 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.15□□□□□ -0.14
FOXA1P55317 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.15□□□□□ -0.14
FOXA1P55317 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
FOXA1P55317 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 CICP8-201ENST00000455800 2813 ntBASIC14.15□□□□□ -0.14
FOXA1P55317 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA1P55317 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA1P55317 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms