Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.02□□□□□ -0.17
MSX2P35548 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.02□□□□□ -0.17
MSX2P35548 TIMM17BP1-201ENST00000545713 516 ntBASIC14.02□□□□□ -0.17
MSX2P35548 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.02□□□□□ -0.17
MSX2P35548 AC107373.2-201ENST00000607735 490 ntBASIC14.02□□□□□ -0.17
MSX2P35548 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
MSX2P35548 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
MSX2P35548 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.02□□□□□ -0.17
MSX2P35548 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.17
MSX2P35548 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
MSX2P35548 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.01□□□□□ -0.17
MSX2P35548 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 AL022342.1-201ENST00000400363 863 ntBASIC14.01□□□□□ -0.17
MSX2P35548 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.01□□□□□ -0.17
MSX2P35548 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 MIR6074-201ENST00000612054 107 ntBASIC14.01□□□□□ -0.17
MSX2P35548 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 AP001059.3-201ENST00000619053 235 ntBASIC14.01□□□□□ -0.17
MSX2P35548 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
MSX2P35548 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC14.01□□□□□ -0.17
MSX2P35548 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
MSX2P35548 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.01□□□□□ -0.17
MSX2P35548 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC14□□□□□ -0.17
MSX2P35548 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC14□□□□□ -0.17
MSX2P35548 PEG13-201ENST00000631594 5667 ntBASIC14□□□□□ -0.17
MSX2P35548 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
MSX2P35548 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14□□□□□ -0.17
MSX2P35548 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14□□□□□ -0.17
MSX2P35548 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
MSX2P35548 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14□□□□□ -0.17
MSX2P35548 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
MSX2P35548 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC14□□□□□ -0.17
MSX2P35548 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC14□□□□□ -0.17
MSX2P35548 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
MSX2P35548 AP002761.4-201ENST00000565433 3361 ntBASIC14□□□□□ -0.17
MSX2P35548 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms