Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 AC239868.1-201ENST00000369385 493 ntBASIC16.97■□□□□ 0.31
ERCC3P19447 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 AL157407.1-201ENST00000435784 904 ntBASIC16.97■□□□□ 0.31
ERCC3P19447 FGFR3P1-201ENST00000449999 601 ntBASIC16.97■□□□□ 0.31
ERCC3P19447 AC008267.1-201ENST00000474858 1069 ntBASIC16.97■□□□□ 0.31
ERCC3P19447 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.97■□□□□ 0.31
ERCC3P19447 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 MYO15B-237ENST00000642007 4893 ntBASIC16.97■□□□□ 0.31
ERCC3P19447 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ERCC3P19447 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.97■□□□□ 0.31
ERCC3P19447 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
ERCC3P19447 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.96■□□□□ 0.31
ERCC3P19447 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 TBC1D3J-201ENST00000620719 1426 ntBASIC16.96■□□□□ 0.31
ERCC3P19447 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.96■□□□□ 0.31
ERCC3P19447 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 INTS4P1-203ENST00000641008 3683 ntBASIC16.96■□□□□ 0.31
ERCC3P19447 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 AC117489.1-201ENST00000625169 3217 ntBASIC16.96■□□□□ 0.31
ERCC3P19447 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 GCOM2-201ENST00000509133 1104 ntBASIC16.96■□□□□ 0.31
ERCC3P19447 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.96■□□□□ 0.31
ERCC3P19447 POU5F1P2-201ENST00000521750 823 ntBASIC16.96■□□□□ 0.31
ERCC3P19447 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
ERCC3P19447 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 KRT8P21-201ENST00000430398 1491 ntBASIC16.96■□□□□ 0.31
ERCC3P19447 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.96■□□□□ 0.31
ERCC3P19447 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.96■□□□□ 0.31
ERCC3P19447 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
ERCC3P19447 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ERCC3P19447 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.31
ERCC3P19447 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.96■□□□□ 0.31
ERCC3P19447 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ERCC3P19447 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.96■□□□□ 0.3
ERCC3P19447 AL122018.1-201ENST00000446607 2310 ntBASIC16.96■□□□□ 0.3
ERCC3P19447 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC16.96■□□□□ 0.3
ERCC3P19447 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
ERCC3P19447 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
ERCC3P19447 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.96■□□□□ 0.3
ERCC3P19447 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.95■□□□□ 0.3
ERCC3P19447 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ERCC3P19447 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC3P19447 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ERCC3P19447 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC3P19447 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 RPL17P11-201ENST00000417593 544 ntBASIC16.95■□□□□ 0.3
ERCC3P19447 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC3P19447 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.95■□□□□ 0.3
ERCC3P19447 IQSEC3P1-201ENST00000538799 536 ntBASIC16.95■□□□□ 0.3
ERCC3P19447 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ERCC3P19447 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
ERCC3P19447 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.95■□□□□ 0.3
ERCC3P19447 AC073352.2-201ENST00000609385 439 ntBASIC16.95■□□□□ 0.3
ERCC3P19447 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.95■□□□□ 0.3
ERCC3P19447 AC103691.2-201ENST00000618824 433 ntBASIC16.95■□□□□ 0.3
ERCC3P19447 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC16.95■□□□□ 0.3
ERCC3P19447 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC16.95■□□□□ 0.3
ERCC3P19447 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ERCC3P19447 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms