Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.35□□□□□ -0.11
PCNAP12004 TPT1P11-201ENST00000458482 498 ntBASIC14.35□□□□□ -0.11
PCNAP12004 AL596325.1-201ENST00000563991 1082 ntBASIC14.35□□□□□ -0.11
PCNAP12004 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 AL358472.5-202ENST00000641448 1267 ntBASIC14.35□□□□□ -0.11
PCNAP12004 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 AC089987.1-201ENST00000551654 2209 ntBASIC14.35□□□□□ -0.11
PCNAP12004 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PCNAP12004 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCNAP12004 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.35□□□□□ -0.11
PCNAP12004 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 AL031595.1-201ENST00000623969 4709 ntBASIC14.34□□□□□ -0.11
PCNAP12004 AL138709.1-201ENST00000614840 1693 ntBASIC14.34□□□□□ -0.11
PCNAP12004 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AL512384.1-201ENST00000406683 331 ntBASIC14.34□□□□□ -0.11
PCNAP12004 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 TMEM14DP-201ENST00000422205 345 ntBASIC14.34□□□□□ -0.11
PCNAP12004 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
PCNAP12004 C2orf27AP3-201ENST00000434123 579 ntBASIC14.34□□□□□ -0.11
PCNAP12004 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.34□□□□□ -0.11
PCNAP12004 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.34□□□□□ -0.11
PCNAP12004 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.34□□□□□ -0.11
PCNAP12004 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 SLC25A47P1-201ENST00000531577 414 ntBASIC14.34□□□□□ -0.11
PCNAP12004 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.34□□□□□ -0.11
PCNAP12004 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.34□□□□□ -0.11
PCNAP12004 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AC015936.2-201ENST00000593177 259 ntBASIC14.34□□□□□ -0.11
PCNAP12004 AL354718.3-201ENST00000616414 581 ntBASIC14.34□□□□□ -0.11
PCNAP12004 CR382287.1-201ENST00000623954 586 ntBASIC14.34□□□□□ -0.11
PCNAP12004 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 AC011840.2-201ENST00000563063 1520 ntBASIC14.34□□□□□ -0.11
PCNAP12004 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 FKBP4P6-201ENST00000457486 1332 ntBASIC14.34□□□□□ -0.11
PCNAP12004 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.34□□□□□ -0.11
PCNAP12004 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCNAP12004 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.34□□□□□ -0.11
PCNAP12004 AC020910.5-201ENST00000623668 1865 ntBASIC14.33□□□□□ -0.11
PCNAP12004 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
PCNAP12004 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.33□□□□□ -0.11
PCNAP12004 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PCNAP12004 CICP17-201ENST00000418553 2377 ntBASIC14.33□□□□□ -0.11
PCNAP12004 AC015802.1-201ENST00000588104 1449 ntBASIC14.33□□□□□ -0.11
PCNAP12004 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
PCNAP12004 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
PCNAP12004 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PCNAP12004 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCNAP12004 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
PCNAP12004 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.33□□□□□ -0.12
PCNAP12004 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
PCNAP12004 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms