Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NUP88Q99567 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP88Q99567 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NUP88Q99567 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 AL157407.1-201ENST00000435784 904 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 FAM58BP-201ENST00000439056 645 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 MSRA-203ENST00000441698 788 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP88Q99567 AL133466.1-201ENST00000447582 150 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.15■□□□□ 0.34
NUP88Q99567 RCC2P8-201ENST00000502779 1035 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC17.15■□□□□ 0.34
NUP88Q99567 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
NUP88Q99567 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP88Q99567 AC079328.1-201ENST00000560358 952 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.15■□□□□ 0.34
NUP88Q99567 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.15■□□□□ 0.34
NUP88Q99567 AC015967.2-201ENST00000624092 234 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 AC006435.4-201ENST00000625037 234 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 AL356737.1-201ENST00000634391 234 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NUP88Q99567 AC232323.1-201ENST00000540724 2099 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NUP88Q99567 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
NUP88Q99567 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
NUP88Q99567 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.15■□□□□ 0.34
NUP88Q99567 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
NUP88Q99567 AL136172.1-201ENST00000598590 1394 ntBASIC17.15■□□□□ 0.34
NUP88Q99567 AL390755.1-201ENST00000623716 2027 ntBASIC17.14■□□□□ 0.34
NUP88Q99567 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.34
NUP88Q99567 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
NUP88Q99567 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP88Q99567 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.14■□□□□ 0.33
NUP88Q99567 AL157791.1-201ENST00000553667 1699 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
NUP88Q99567 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP88Q99567 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
NUP88Q99567 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.14■□□□□ 0.33
NUP88Q99567 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 RN7SL720P-201ENST00000488178 304 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC17.14■□□□□ 0.33
NUP88Q99567 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.14■□□□□ 0.33
NUP88Q99567 AC016629.1-201ENST00000596579 586 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 AL132994.2-201ENST00000603120 687 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 AL136295.7-201ENST00000619226 1200 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 AC100757.4-201ENST00000626934 759 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP88Q99567 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.14■□□□□ 0.33
NUP88Q99567 CYP4F23P-201ENST00000593402 1579 ntBASIC17.14■□□□□ 0.33
NUP88Q99567 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC17.14■□□□□ 0.33
NUP88Q99567 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
NUP88Q99567 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
NUP88Q99567 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 AJ011931.1-201ENST00000618749 2492 ntBASIC17.13■□□□□ 0.33
NUP88Q99567 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
NUP88Q99567 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.13■□□□□ 0.33
NUP88Q99567 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.13■□□□□ 0.33
NUP88Q99567 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.13■□□□□ 0.33
NUP88Q99567 RN7SL769P-201ENST00000469386 295 ntBASIC17.13■□□□□ 0.33
NUP88Q99567 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC17.13■□□□□ 0.33
NUP88Q99567 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
NUP88Q99567 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.13■□□□□ 0.33
NUP88Q99567 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC17.13■□□□□ 0.33
NUP88Q99567 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC17.13■□□□□ 0.33
NUP88Q99567 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.13■□□□□ 0.33
NUP88Q99567 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms