Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 VPS28-201ENST00000292510 979 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 PHBP10-201ENST00000416467 784 ntBASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 AC004923.3-201ENST00000527532 355 ntBASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC9.46□□□□□ -0.9
VPS13DQ5THJ4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 NRADDP-201ENST00000437305 691 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ASS1P2-201ENST00000439895 1223 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 SORD2P-201ENST00000558556 1069 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AC090505.1-201ENST00000430515 1834 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 RPSAP6-201ENST00000417882 882 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 RN7SL605P-201ENST00000577229 281 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 FAM226B-201ENST00000602508 1490 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 U3.5-201ENST00000363448 216 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 G0S2-201ENST00000367029 866 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 SSR4-202ENST00000370085 526 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 MIR2278-201ENST00000516344 96 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 SRPK2P-201ENST00000523408 1100 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 AL591471.1-201ENST00000621855 229 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TUBB4AP1-201ENST00000450755 1325 ntBASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
VPS13DQ5THJ4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms