Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 SERBP1P2-201ENST00000436888 1164 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 GNG10P1-201ENST00000452289 199 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 TPT1P11-201ENST00000458482 498 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 SORD2P-201ENST00000558556 1069 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 FBXO36P1-201ENST00000579006 471 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 AC023141.7-201ENST00000430646 407 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 AL591471.1-201ENST00000621855 229 ntBASIC17.48■□□□□ 0.39
CCDC88AQ3V6T2 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 AC144831.1-201ENST00000573312 2656 ntBASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 AC008026.2-201ENST00000495438 348 ntBASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 PMEL-214ENST00000550447 901 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 GGNBP1-204ENST00000613113 887 ntBASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 AP000769.1-203ENST00000637245 208 ntBASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 FGD5P1-202ENST00000614866 2498 ntBASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC88AQ3V6T2 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 AL157823.1-201ENST00000403727 628 ntBASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 AC098934.1-203ENST00000442868 1262 ntBASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 ALG1L7P-201ENST00000502317 768 ntBASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 AC140658.4-201ENST00000561990 352 ntBASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC88AQ3V6T2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms