Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC12.48□□□□□ -0.41
USF1P22415 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 AC106881.1-201ENST00000605849 3329 ntBASIC12.48□□□□□ -0.41
USF1P22415 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 AC005089.1-201ENST00000619486 2241 ntBASIC12.48□□□□□ -0.41
USF1P22415 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC12.48□□□□□ -0.41
USF1P22415 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC12.48□□□□□ -0.41
USF1P22415 RN7SKP175-201ENST00000408472 289 ntBASIC12.48□□□□□ -0.41
USF1P22415 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.48□□□□□ -0.41
USF1P22415 MPRIPP1-201ENST00000452433 1089 ntBASIC12.48□□□□□ -0.41
USF1P22415 AC104073.2-201ENST00000453737 312 ntBASIC12.48□□□□□ -0.41
USF1P22415 HNRNPA1P36-201ENST00000521313 955 ntBASIC12.48□□□□□ -0.41
USF1P22415 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.48□□□□□ -0.41
USF1P22415 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC12.48□□□□□ -0.41
USF1P22415 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC12.48□□□□□ -0.41
USF1P22415 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC12.48□□□□□ -0.41
USF1P22415 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC12.48□□□□□ -0.41
USF1P22415 AL358472.3-201ENST00000608147 415 ntBASIC12.48□□□□□ -0.41
USF1P22415 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 AL162426.1-201ENST00000624141 743 ntBASIC12.48□□□□□ -0.41
USF1P22415 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
USF1P22415 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 AC007292.2-201ENST00000593524 1812 ntBASIC12.48□□□□□ -0.41
USF1P22415 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.48□□□□□ -0.41
USF1P22415 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USF1P22415 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 PES1-204ENST00000402284 2144 ntTSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
USF1P22415 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
USF1P22415 AC008132.1-202ENST00000342005 1389 ntBASIC12.47□□□□□ -0.41
USF1P22415 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
USF1P22415 NPPA-201ENST00000376476 728 ntTSL 3 BASIC12.47□□□□□ -0.41
USF1P22415 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms