Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.55□□□□□ -0.4
SDCBPO00560 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.55□□□□□ -0.4
SDCBPO00560 BRI3BPP1-201ENST00000594224 787 ntBASIC12.55□□□□□ -0.4
SDCBPO00560 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC12.55□□□□□ -0.4
SDCBPO00560 AC093726.1-201ENST00000608064 963 ntBASIC12.55□□□□□ -0.4
SDCBPO00560 AL662799.1-202ENST00000614205 422 ntBASIC12.55□□□□□ -0.4
SDCBPO00560 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 AJ011932.1-201ENST00000621707 465 ntBASIC12.55□□□□□ -0.4
SDCBPO00560 AC007431.3-201ENST00000623221 587 ntBASIC12.55□□□□□ -0.4
SDCBPO00560 BX539320.1-201ENST00000623759 877 ntBASIC12.55□□□□□ -0.4
SDCBPO00560 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
SDCBPO00560 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.55□□□□□ -0.4
SDCBPO00560 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
SDCBPO00560 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.55□□□□□ -0.4
SDCBPO00560 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
SDCBPO00560 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
SDCBPO00560 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC12.55□□□□□ -0.4
SDCBPO00560 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.55□□□□□ -0.4
SDCBPO00560 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SDCBPO00560 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 TCAF1P1-201ENST00000414990 2232 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 AC007541.1-201ENST00000570282 1469 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 AC020910.6-201ENST00000623084 1459 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SDCBPO00560 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 DFFBP1-201ENST00000433250 979 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC12.54□□□□□ -0.4
SDCBPO00560 TSPY16P-201ENST00000449843 468 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.54□□□□□ -0.4
SDCBPO00560 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC12.54□□□□□ -0.4
SDCBPO00560 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 SERBP1P5-201ENST00000510079 1181 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.54□□□□□ -0.4
SDCBPO00560 GLI4-203ENST00000517468 963 ntTSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 AP001582.1-201ENST00000525856 295 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC12.54□□□□□ -0.4
SDCBPO00560 AC123567.1-201ENST00000548294 1261 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.54□□□□□ -0.4
SDCBPO00560 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.54□□□□□ -0.4
SDCBPO00560 AL132655.2-201ENST00000596276 594 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 AL391825.1-201ENST00000457671 1364 ntBASIC12.54□□□□□ -0.4
SDCBPO00560 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SDCBPO00560 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SDCBPO00560 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SDCBPO00560 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
SDCBPO00560 GSN-209ENST00000449733 2702 ntTSL 2 BASIC12.53□□□□□ -0.4
SDCBPO00560 RN7SL832P-201ENST00000607781 1756 ntBASIC12.53□□□□□ -0.4
SDCBPO00560 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SDCBPO00560 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms