Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 AC024681.1-201ENST00000521917 487 ntBASIC13.48□□□□□ -0.25
LRFN1Q9P244 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 RBM8B-201ENST00000555532 525 ntBASIC13.48□□□□□ -0.25
LRFN1Q9P244 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.48□□□□□ -0.25
LRFN1Q9P244 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
LRFN1Q9P244 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC144522.1-201ENST00000625111 1658 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 HNRNPA1P27-201ENST00000412087 955 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 AL645933.1-201ENST00000440087 609 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC012618.1-201ENST00000461223 412 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 RN7SL769P-201ENST00000469386 295 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 RN7SL720P-201ENST00000488178 304 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AL161670.2-201ENST00000557650 1227 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC097724.1-201ENST00000609581 426 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
LRFN1Q9P244 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 AC087386.2-201ENST00000623212 4637 ntBASIC13.47□□□□□ -0.25
LRFN1Q9P244 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
LRFN1Q9P244 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.46□□□□□ -0.25
LRFN1Q9P244 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.46□□□□□ -0.25
LRFN1Q9P244 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.46□□□□□ -0.25
LRFN1Q9P244 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
LRFN1Q9P244 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms