Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 AC020904.3-201ENST00000624199 442 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 BX322534.1-201ENST00000635574 241 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 AC215524.1-201ENST00000635696 241 ntBASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.27■□□□□ 0.52
SHANK3Q9BYB0 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 PAUPAR-201ENST00000630360 2965 ntBASIC18.27■□□□□ 0.51
SHANK3Q9BYB0 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC103563.1-201ENST00000429316 123 ntBASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 CDCA4P4-201ENST00000435216 680 ntBASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC005722.1-201ENST00000431878 964 ntBASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC142086.5-202ENST00000562500 217 ntBASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 AC011462.4-201ENST00000616866 449 ntBASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.26■□□□□ 0.51
SHANK3Q9BYB0 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 RPL13AP3-202ENST00000494676 1473 ntBASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 AC026120.2-201ENST00000617239 309 ntBASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SHANK3Q9BYB0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 TUBB8P4-201ENST00000511806 1324 ntBASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 Z98885.3-201ENST00000624882 1757 ntBASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC18.24■□□□□ 0.51
SHANK3Q9BYB0 FAM187B2P-201ENST00000577135 713 ntBASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms