Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 GK-202ENST00000378941 458 ntTSL 3 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AC074338.1-201ENST00000416825 156 ntBASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AC012645.4-201ENST00000610691 1061 ntBASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 AC090505.1-201ENST00000430515 1834 ntBASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
DEPDC4Q8N2C3 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 KRT17P7-201ENST00000451704 1104 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC107884.1-203ENST00000530846 628 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC055876.2-201ENST00000531834 546 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SPDYE22P-201ENST00000582158 798 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SRD5A3P1-201ENST00000603021 949 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC004461.2-201ENST00000629517 803 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC025048.6-201ENST00000634326 1161 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 AC015818.8-201ENST00000587907 1519 ntBASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
DEPDC4Q8N2C3 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms