Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 AL365181.3-201ENST00000605886 3222 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.08□□□□□ -0.48
NKX2-1P43699 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 BX842568.4-201ENST00000421222 227 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC12.08□□□□□ -0.48
NKX2-1P43699 ALG1L5P-201ENST00000482043 771 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.08□□□□□ -0.48
NKX2-1P43699 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 MIR4453-201ENST00000584019 89 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 AC022145.2-201ENST00000598203 171 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 AC105339.1-204ENST00000636249 355 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 HPD-204ENST00000543163 1709 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 KRT8P35-201ENST00000483942 1338 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 AC011498.7-201ENST00000624986 2027 ntBASIC12.08□□□□□ -0.48
NKX2-1P43699 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
NKX2-1P43699 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
NKX2-1P43699 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
NKX2-1P43699 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC12.07□□□□□ -0.48
NKX2-1P43699 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 AL136172.1-201ENST00000598590 1394 ntBASIC12.07□□□□□ -0.48
NKX2-1P43699 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
NKX2-1P43699 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
NKX2-1P43699 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AL627223.1-201ENST00000416693 442 ntBASIC12.07□□□□□ -0.48
NKX2-1P43699 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.07□□□□□ -0.48
NKX2-1P43699 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
NKX2-1P43699 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 AP000347.1-202ENST00000435868 847 ntBASIC12.07□□□□□ -0.48
NKX2-1P43699 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 SPDYE14P-201ENST00000442619 822 ntBASIC12.07□□□□□ -0.48
NKX2-1P43699 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 YBX1P5-201ENST00000509441 847 ntBASIC12.07□□□□□ -0.48
NKX2-1P43699 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.07□□□□□ -0.48
NKX2-1P43699 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
NKX2-1P43699 PUS1-205ENST00000535067 838 ntTSL 3 BASIC12.07□□□□□ -0.48
NKX2-1P43699 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
NKX2-1P43699 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.07□□□□□ -0.48
NKX2-1P43699 MIR6080-201ENST00000617359 66 ntBASIC12.07□□□□□ -0.48
NKX2-1P43699 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
NKX2-1P43699 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
NKX2-1P43699 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.07□□□□□ -0.48
NKX2-1P43699 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
NKX2-1P43699 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms