Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 MIR663B-201ENST00000408361 115 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 BTBD6P1-201ENST00000412176 1267 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 ST13P19-201ENST00000442505 1124 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.19■□□□□ 0.02
PTPN9P43378 TUBB8P8-201ENST00000458717 1058 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 AL160314.3-201ENST00000556041 767 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.19■□□□□ 0.02
PTPN9P43378 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 AL096828.3-201ENST00000615354 462 ntBASIC15.19■□□□□ 0.02
PTPN9P43378 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.19■□□□□ 0.02
PTPN9P43378 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.19■□□□□ 0.02
PTPN9P43378 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.19■□□□□ 0.02
PTPN9P43378 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PTPN9P43378 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PTPN9P43378 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN9P43378 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN9P43378 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PTPN9P43378 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
PTPN9P43378 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN9P43378 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 AC005730.2-201ENST00000564549 1184 ntBASIC15.18■□□□□ 0.02
PTPN9P43378 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC15.18■□□□□ 0.02
PTPN9P43378 AC005962.1-201ENST00000584100 773 ntBASIC15.18■□□□□ 0.02
PTPN9P43378 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.18■□□□□ 0.02
PTPN9P43378 AC005324.6-201ENST00000587972 613 ntBASIC15.18■□□□□ 0.02
PTPN9P43378 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.18■□□□□ 0.02
PTPN9P43378 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.18■□□□□ 0.02
PTPN9P43378 AL359881.2-201ENST00000602973 570 ntBASIC15.18■□□□□ 0.02
PTPN9P43378 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
PTPN9P43378 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.02
PTPN9P43378 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
PTPN9P43378 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PTPN9P43378 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.18■□□□□ 0.02
PTPN9P43378 AC126755.1-201ENST00000525846 6405 ntBASIC15.18■□□□□ 0.02
PTPN9P43378 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 TUBB8P4-201ENST00000511806 1324 ntBASIC15.17■□□□□ 0.02
PTPN9P43378 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.17■□□□□ 0.02
PTPN9P43378 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PTPN9P43378 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms