Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
HNF4AP41235 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 RN7SKP175-201ENST00000408472 289 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 CD8B2-202ENST00000417670 633 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.29□□□□□ -0.12
HNF4AP41235 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.29□□□□□ -0.12
HNF4AP41235 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 KRT90P-201ENST00000549264 1064 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.29□□□□□ -0.12
HNF4AP41235 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 AC239800.4-201ENST00000603712 296 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 AP001002.3-201ENST00000623482 206 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.29□□□□□ -0.12
HNF4AP41235 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 AL354989.2-201ENST00000435838 1540 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.29□□□□□ -0.12
HNF4AP41235 AC027601.5-201ENST00000624065 2482 ntBASIC14.29□□□□□ -0.12
HNF4AP41235 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.29□□□□□ -0.12
HNF4AP41235 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HNF4AP41235 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HNF4AP41235 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.28□□□□□ -0.12
HNF4AP41235 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.28□□□□□ -0.12
HNF4AP41235 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HNF4AP41235 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 MIR1202-201ENST00000408529 83 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 AC090505.1-201ENST00000430515 1834 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.28□□□□□ -0.12
HNF4AP41235 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 KLF2P4-201ENST00000451959 1225 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 GPR53P-205ENST00000457298 1084 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.28□□□□□ -0.12
HNF4AP41235 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HNF4AP41235 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.28□□□□□ -0.12
HNF4AP41235 AL391280.1-201ENST00000506969 1062 ntBASIC14.28□□□□□ -0.12
HNF4AP41235 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
HNF4AP41235 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.28□□□□□ -0.12
HNF4AP41235 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.28□□□□□ -0.12
HNF4AP41235 AC106820.3-201ENST00000561653 397 ntBASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms