Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 MIR4722-201ENST00000578292 60 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 AC103810.10-201ENST00000606504 343 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 AC021016.3-201ENST00000608367 477 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 AL022334.2-201ENST00000610000 484 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 RPSAP15-201ENST00000448168 861 ntBASIC17.17■□□□□ 0.34
HLA-DOAP06340 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 TPM1-223ENST00000560445 485 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 AC005586.2-201ENST00000563946 837 ntBASIC17.17■□□□□ 0.34
HLA-DOAP06340 AC093752.3-201ENST00000567343 901 ntBASIC17.17■□□□□ 0.34
HLA-DOAP06340 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 SPCS2P2-201ENST00000603270 608 ntBASIC17.17■□□□□ 0.34
HLA-DOAP06340 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HLA-DOAP06340 TSPY26P-202ENST00000565928 3884 ntBASIC17.17■□□□□ 0.34
HLA-DOAP06340 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HLA-DOAP06340 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 AC069218.1-201ENST00000435269 762 ntBASIC17.16■□□□□ 0.34
HLA-DOAP06340 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms