Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VTNP04004 AC063926.3-201ENST00000624734 5658 ntBASIC15.98■□□□□ 0.15
VTNP04004 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VTNP04004 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VTNP04004 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VTNP04004 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
VTNP04004 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 AL627231.1-201ENST00000394467 1125 ntBASIC15.97■□□□□ 0.15
VTNP04004 AC069218.1-201ENST00000435269 762 ntBASIC15.97■□□□□ 0.15
VTNP04004 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
VTNP04004 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC15.97■□□□□ 0.15
VTNP04004 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.97■□□□□ 0.15
VTNP04004 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.97■□□□□ 0.15
VTNP04004 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC15.97■□□□□ 0.15
VTNP04004 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.97■□□□□ 0.15
VTNP04004 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.97■□□□□ 0.15
VTNP04004 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.97■□□□□ 0.15
VTNP04004 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.97■□□□□ 0.15
VTNP04004 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 MYADML-201ENST00000474610 2147 ntBASIC15.97■□□□□ 0.15
VTNP04004 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VTNP04004 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.96■□□□□ 0.15
VTNP04004 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 AP002353.1-201ENST00000528257 1599 ntBASIC15.96■□□□□ 0.15
VTNP04004 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
VTNP04004 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 RPS2P36-201ENST00000456516 831 ntBASIC15.96■□□□□ 0.15
VTNP04004 NEU3-205ENST00000531619 582 ntTSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC15.96■□□□□ 0.15
VTNP04004 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.96■□□□□ 0.15
VTNP04004 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC15.96■□□□□ 0.15
VTNP04004 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.96■□□□□ 0.15
VTNP04004 AL022334.2-201ENST00000610000 484 ntBASIC15.96■□□□□ 0.15
VTNP04004 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.96■□□□□ 0.15
VTNP04004 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.96■□□□□ 0.15
VTNP04004 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
VTNP04004 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
VTNP04004 AC215219.1-201ENST00000400706 1817 ntBASIC15.96■□□□□ 0.14
VTNP04004 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
VTNP04004 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
VTNP04004 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VTNP04004 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms