Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.5□□□□□ -0.25
NKX2-2O95096 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.5□□□□□ -0.25
NKX2-2O95096 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 AC100827.2-201ENST00000563214 1194 ntBASIC13.5□□□□□ -0.25
NKX2-2O95096 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 AC010328.2-201ENST00000597698 1111 ntBASIC13.5□□□□□ -0.25
NKX2-2O95096 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
NKX2-2O95096 Z98259.2-201ENST00000641583 609 ntBASIC13.5□□□□□ -0.25
NKX2-2O95096 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.5□□□□□ -0.25
NKX2-2O95096 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.5□□□□□ -0.25
NKX2-2O95096 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
NKX2-2O95096 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.49□□□□□ -0.25
NKX2-2O95096 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 CICP16-201ENST00000502609 2813 ntBASIC13.49□□□□□ -0.25
NKX2-2O95096 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
NKX2-2O95096 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.49□□□□□ -0.25
NKX2-2O95096 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 AC012441.2-201ENST00000444843 739 ntBASIC13.49□□□□□ -0.25
NKX2-2O95096 KLF2P1-201ENST00000447438 1042 ntBASIC13.49□□□□□ -0.25
NKX2-2O95096 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.49□□□□□ -0.25
NKX2-2O95096 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.49□□□□□ -0.25
NKX2-2O95096 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 RBM8B-201ENST00000555532 525 ntBASIC13.49□□□□□ -0.25
NKX2-2O95096 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.49□□□□□ -0.25
NKX2-2O95096 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
NKX2-2O95096 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
NKX2-2O95096 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.49□□□□□ -0.25
NKX2-2O95096 REXO1L6P-201ENST00000603433 1515 ntBASIC13.49□□□□□ -0.25
NKX2-2O95096 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
NKX2-2O95096 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
NKX2-2O95096 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX2-2O95096 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
NKX2-2O95096 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX2-2O95096 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.48□□□□□ -0.25
NKX2-2O95096 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
NKX2-2O95096 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
NKX2-2O95096 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
NKX2-2O95096 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX2-2O95096 TUBB8P4-201ENST00000511806 1324 ntBASIC13.48□□□□□ -0.25
NKX2-2O95096 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.48□□□□□ -0.25
NKX2-2O95096 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
NKX2-2O95096 ATP5G2P4-201ENST00000442175 420 ntBASIC13.48□□□□□ -0.25
NKX2-2O95096 HSPB1P2-201ENST00000448722 546 ntBASIC13.48□□□□□ -0.25
NKX2-2O95096 BNIP3P42-201ENST00000454982 569 ntBASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms