Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CHMP4AQ9BY43 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 AC113367.3-201ENST00000508316 1912 ntBASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 DEF8-202ENST00000418391 852 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 AC090857.1-201ENST00000527400 390 ntBASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 AC090386.2-201ENST00000623010 1039 ntBASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 SLC9A3P3-201ENST00000457608 2229 ntBASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 KRT8P21-201ENST00000430398 1491 ntBASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP4AQ9BY43 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP4AQ9BY43 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 CYP46A4P-201ENST00000414953 267 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 SLC25A24P2-201ENST00000415059 510 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AL161932.2-201ENST00000435436 679 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AL133466.1-201ENST00000447582 150 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 IGHV3OR16-16-201ENST00000563644 343 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AC104506.1-201ENST00000609247 429 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 CU633904.3-201ENST00000624042 1029 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AC138627.1-207ENST00000641560 1006 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AC215219.1-201ENST00000400706 1817 ntBASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 USP35-204ENST00000530267 2419 ntTSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP4AQ9BY43 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP4AQ9BY43 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms