Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE4Q8N205 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE4Q8N205 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE4Q8N205 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE4Q8N205 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE4Q8N205 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SYNE4Q8N205 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC18.05■□□□□ 0.48
SYNE4Q8N205 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 MARK2P16-201ENST00000605714 1723 ntBASIC18.04■□□□□ 0.48
SYNE4Q8N205 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 HIST2H2BA-201ENST00000412169 381 ntBASIC18.04■□□□□ 0.48
SYNE4Q8N205 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 LYPLA2P1-203ENST00000447689 696 ntBASIC18.04■□□□□ 0.48
SYNE4Q8N205 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 POLD4-208ENST00000532830 904 ntTSL 3 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 AC073911.3-201ENST00000624401 631 ntBASIC18.04■□□□□ 0.48
SYNE4Q8N205 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC18.04■□□□□ 0.48
SYNE4Q8N205 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNE4Q8N205 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.03■□□□□ 0.48
SYNE4Q8N205 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 AC073869.2-201ENST00000417338 1026 ntBASIC18.03■□□□□ 0.48
SYNE4Q8N205 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 KRT8P1-201ENST00000557533 1207 ntBASIC18.03■□□□□ 0.48
SYNE4Q8N205 AC105137.3-201ENST00000617588 984 ntBASIC18.03■□□□□ 0.48
SYNE4Q8N205 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNE4Q8N205 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC18.03■□□□□ 0.48
SYNE4Q8N205 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 MYADML-201ENST00000474610 2147 ntBASIC18.02■□□□□ 0.48
SYNE4Q8N205 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNE4Q8N205 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SYNE4Q8N205 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNE4Q8N205 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNE4Q8N205 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNE4Q8N205 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNE4Q8N205 AC010234.1-201ENST00000494599 870 ntBASIC18.02■□□□□ 0.48
SYNE4Q8N205 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SYNE4Q8N205 AC095040.1-201ENST00000513286 675 ntBASIC18.02■□□□□ 0.48
SYNE4Q8N205 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms