Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 ACTG1P3-201ENST00000431775 1114 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 PUDPP3-201ENST00000445368 636 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 ALG3P1-201ENST00000508806 1114 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 AP003171.2-201ENST00000528208 925 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 TDH-203ENST00000531764 1110 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.22□□□□□ -0.13
FOXA1P55317 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.22□□□□□ -0.13
FOXA1P55317 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.22□□□□□ -0.13
FOXA1P55317 SPCS2P1-201ENST00000561636 679 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 TP53TG3HP-202ENST00000569755 579 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 RN7SL48P-201ENST00000579283 293 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 GNRHR2-203ENST00000581100 1187 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 AC010319.3-201ENST00000597028 470 ntBASIC14.22□□□□□ -0.13
FOXA1P55317 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA1P55317 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA1P55317 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA1P55317 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
FOXA1P55317 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
FOXA1P55317 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 AC068587.3-201ENST00000526613 355 ntBASIC14.21□□□□□ -0.13
FOXA1P55317 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.21□□□□□ -0.13
FOXA1P55317 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.21□□□□□ -0.13
FOXA1P55317 AC106820.3-201ENST00000561653 397 ntBASIC14.21□□□□□ -0.13
FOXA1P55317 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA1P55317 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA1P55317 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA1P55317 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
FOXA1P55317 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA1P55317 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA1P55317 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA1P55317 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
FOXA1P55317 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA1P55317 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
FOXA1P55317 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms