Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC15.24■□□□□ 0.03
COL4A4P53420 OR51A9P-201ENST00000422578 911 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC15.24■□□□□ 0.03
COL4A4P53420 BPIFB5P-201ENST00000457066 1099 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.24■□□□□ 0.03
COL4A4P53420 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC15.24■□□□□ 0.03
COL4A4P53420 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC15.24■□□□□ 0.03
COL4A4P53420 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
COL4A4P53420 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC15.24■□□□□ 0.03
COL4A4P53420 MBP-238ENST00000580402 915 ntTSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 FTLP5-201ENST00000586853 534 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 AC104506.1-201ENST00000609247 429 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 AC090386.2-201ENST00000623010 1039 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL4A4P53420 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC15.24■□□□□ 0.03
COL4A4P53420 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.24■□□□□ 0.03
COL4A4P53420 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 AC007191.1-201ENST00000623179 2995 ntBASIC15.24■□□□□ 0.03
COL4A4P53420 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.24■□□□□ 0.03
COL4A4P53420 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL4A4P53420 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
COL4A4P53420 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 AC019109.1-201ENST00000401725 1874 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL4A4P53420 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC15.23■□□□□ 0.03
COL4A4P53420 SNORA57-201ENST00000383870 149 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
COL4A4P53420 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC15.23■□□□□ 0.03
COL4A4P53420 AC018638.5-201ENST00000450885 754 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC15.23■□□□□ 0.03
COL4A4P53420 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
COL4A4P53420 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.23■□□□□ 0.03
COL4A4P53420 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 AL160191.2-201ENST00000603975 601 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 AC011462.4-201ENST00000616866 449 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 AC020904.3-201ENST00000624199 442 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.23■□□□□ 0.03
COL4A4P53420 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
COL4A4P53420 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.23■□□□□ 0.03
COL4A4P53420 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 RN7SL832P-201ENST00000607781 1756 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 AC067931.2-201ENST00000623655 2003 ntBASIC15.23■□□□□ 0.03
COL4A4P53420 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL4A4P53420 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL4A4P53420 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 AF274858.1-201ENST00000406288 372 ntBASIC15.22■□□□□ 0.03
COL4A4P53420 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 AL451000.1-201ENST00000451300 1186 ntBASIC15.22■□□□□ 0.03
COL4A4P53420 GDNF-207ENST00000515058 764 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 GOLGA2P7-209ENST00000560408 745 ntBASIC15.22■□□□□ 0.03
COL4A4P53420 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.22■□□□□ 0.03
COL4A4P53420 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC15.22■□□□□ 0.03
COL4A4P53420 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
COL4A4P53420 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL4A4P53420 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
COL4A4P53420 AC097359.2-201ENST00000604992 2389 ntBASIC15.22■□□□□ 0.03
COL4A4P53420 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL4A4P53420 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.22■□□□□ 0.03
COL4A4P53420 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms