Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 REXO1L6P-201ENST00000603433 1515 ntBASIC15.22■□□□□ 0.03
PTPN9P43378 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.22■□□□□ 0.03
PTPN9P43378 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.22■□□□□ 0.03
PTPN9P43378 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PTPN9P43378 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PTPN9P43378 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.21■□□□□ 0.03
PTPN9P43378 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 RPL13AP20-201ENST00000459725 609 ntBASIC15.21■□□□□ 0.03
PTPN9P43378 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.21■□□□□ 0.03
PTPN9P43378 RBM8B-201ENST00000555532 525 ntBASIC15.21■□□□□ 0.03
PTPN9P43378 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.21■□□□□ 0.03
PTPN9P43378 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 TECR-220ENST00000600083 1204 ntTSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
PTPN9P43378 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
PTPN9P43378 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PTPN9P43378 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
PTPN9P43378 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.21■□□□□ 0.03
PTPN9P43378 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PTPN9P43378 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN9P43378 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN9P43378 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
PTPN9P43378 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PTPN9P43378 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
PTPN9P43378 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.21■□□□□ 0.02
PTPN9P43378 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
PTPN9P43378 TUBB1P2-201ENST00000422712 1306 ntBASIC15.2■□□□□ 0.02
PTPN9P43378 TUBB1P1-201ENST00000503144 1300 ntBASIC15.2■□□□□ 0.02
PTPN9P43378 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PTPN9P43378 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
PTPN9P43378 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.2■□□□□ 0.02
PTPN9P43378 GOLGA2P4-201ENST00000441462 777 ntBASIC15.2■□□□□ 0.02
PTPN9P43378 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.2■□□□□ 0.02
PTPN9P43378 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN9P43378 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN9P43378 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN9P43378 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.2■□□□□ 0.02
PTPN9P43378 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
PTPN9P43378 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.2■□□□□ 0.02
PTPN9P43378 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.2■□□□□ 0.02
PTPN9P43378 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.2■□□□□ 0.02
PTPN9P43378 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC15.2■□□□□ 0.02
PTPN9P43378 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN9P43378 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN9P43378 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.2■□□□□ 0.02
PTPN9P43378 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN9P43378 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PTPN9P43378 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.2■□□□□ 0.02
PTPN9P43378 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
PTPN9P43378 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PTPN9P43378 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PTPN9P43378 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms