Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX2P35548 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
MSX2P35548 AC004461.2-201ENST00000629517 803 ntBASIC14.08□□□□□ -0.16
MSX2P35548 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.08□□□□□ -0.16
MSX2P35548 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX2P35548 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX2P35548 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
MSX2P35548 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX2P35548 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX2P35548 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
MSX2P35548 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
MSX2P35548 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.07□□□□□ -0.16
MSX2P35548 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX2P35548 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
MSX2P35548 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX2P35548 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX2P35548 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX2P35548 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 AL353779.1-201ENST00000434793 351 ntBASIC14.07□□□□□ -0.16
MSX2P35548 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.07□□□□□ -0.16
MSX2P35548 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX2P35548 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 PGAM5P1-201ENST00000518923 814 ntBASIC14.07□□□□□ -0.16
MSX2P35548 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX2P35548 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX2P35548 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX2P35548 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX2P35548 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 MTDHP5-201ENST00000598980 586 ntBASIC14.07□□□□□ -0.16
MSX2P35548 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.07□□□□□ -0.16
MSX2P35548 TEX28P1-201ENST00000613479 1221 ntBASIC14.07□□□□□ -0.16
MSX2P35548 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.07□□□□□ -0.16
MSX2P35548 TEX28P2-201ENST00000617764 1221 ntBASIC14.07□□□□□ -0.16
MSX2P35548 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX2P35548 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX2P35548 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 TUBB3P1-201ENST00000405796 1332 ntBASIC14.07□□□□□ -0.16
MSX2P35548 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 AL136172.1-201ENST00000598590 1394 ntBASIC14.07□□□□□ -0.16
MSX2P35548 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX2P35548 SALL4P5-201ENST00000419001 1760 ntBASIC14.06□□□□□ -0.16
MSX2P35548 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
MSX2P35548 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX2P35548 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX2P35548 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX2P35548 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX2P35548 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX2P35548 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX2P35548 RN7SL618P-201ENST00000477850 296 ntBASIC14.06□□□□□ -0.16
MSX2P35548 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 AC044860.1-202ENST00000559481 777 ntBASIC14.06□□□□□ -0.16
MSX2P35548 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX2P35548 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX2P35548 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms